The Chronicles of the Chronicle Flask: 2020

It’s officially time to put 2020 in the bin! Hurrah! And that means it’s time for a round-up of everything on this blog from the last twelve months. It’s not all COVID-19 related, I promise…

Mystery purple crystals

January began with a mystery, about some strange, blueish-purple crystals that were found under a sink. What were they? Well, if you missed it, or you’ve just forgotten, the answer is here

I had no idea at the time, but February was the calm before the storm. I was cheerfully talking about the Pocket Chemist. Have you got one? The post has a discount code, and they’re amazingly useful things. Especially if you’re studying from home…

Everything kicked off in March, and back in those early days everyone was all about the hand-washing. It may not be the burniest or the flashiest, but soap chemistry is some of the oldest chemistry we know. Oh, yes, and wash your hands. Properly.

We were all home learning in April. Or trying to, at least. Lots of chemists started messing about with stuff at home in particular, @CrocodileChemist (aka Isobel Everest give her a follow) created some gorgeous art with home-made indicators. I wrote all about an easy version, made with the classic: red cabbage.

Red cabbage indicator with various household substances

May featured pyrotechnics. Well, everything was on fire, so it seemed apt. Also, it was the thirtieth anniversary of the publication of the novel, Good Omens.

It was back to COVID-19 science in June, because everyone was talking about dexamethasone a well-known, readily available and, crucially, cheap steroid that has been shown to help patients with the most severe symptoms. Want to know more about its history? Check out the post.

By July nothing was over, but we’d definitely all had enough. So it was time to talk about something completely different. What better than a post all about sweet things, to mark national lollipop day?

In August the folks at Genius Lab Gear sent me an awesome set of Science Word Magnets. Do you need a set of these for when you finally make it back to a whiteboard? Check out this post for a discount code

September was all about skin chemistry

There’s evidence that low vitamin D levels are correlated with worse COVID-19 outcomes and, in the UK, we can’t make it in our skin in the winter months so September was all about vitamin D. Want to know more? Read all about sunshine and skin chemistry.

It’s Mole Day on the 23rd of October, so I did some ridiculous and, frankly, slightly disgusting calculations. Did you know that if we drained the blood out of every, single human on the planet, we’d only have about half a mole of red blood cells? You do now.

In November I went back to cleaning chemistry. Well, we had all been stuck at home for a while. This time, it was ovens. Why is cleaning ovens such hard work? Why do we use the chemicals we use? I explained all that. Read on!

Annnnd that brings us to December, and the STEM Heroes Colouring Book — a project I’m super proud to be a part of. So, hey, there’s been some good stuff!

Here’s to the end of 2020, and let’s hope that 2021 brings us some good things. It has to, surely? January traditionally brings a health scare, but no one’s doing that in 2021, are they? Are they? I guess we’ll find out soon… lots of love to everyone, stay safe, and stay well!


Like the Chronicle Flask’s Facebook page for regular updates, or follow @chronicleflask on Twitter. Content is © Kat Day 2021. You may share or link to anything here, but you must reference this site if you do. If you enjoy reading my blog, please consider buying me a coffee through Ko-fi using the button below.
Buy Me a Coffee at ko-fi.com

Onerous ovens: why is cleaning the cooker such a chore?

As I write Thanksgiving was a few days ago, when most Americans traditionally cook a very large meal based around roasted turkey. Most Brits – and other countries of course – have the same thing coming up soon in the form of Christmas, and there are lots of other celebrations around this time of year that seem to feature cooking and food quite heavily.

Whatever your traditions, then, it’s a time when many of us frown critically at the dark, sticky depths of our oven and wonder if, perhaps, we should attempt to give it a clean. Or at least pay someone else to come and clean it.

Why is oven cleaning such a difficult and unpleasant job, anyway? It’s not that hard to clean other surfaces, is it? Why are ovens so particularly awful?

Well, to explain this, we first need to understand fats.

Fats vaporise during cooking.

Most of the grime in your oven is fat, combined with the carbonised remains of… something or other. The sorts of fats that are common in animal and plant products have boiling points around the 300 oC mark (animal fats typically having higher values than plant oils), but they start to form vapours at much lower temperatures, and certainly at typical cooking temperatures there’s plenty vaporised oil around. Besides, under typical conditions most oils will “smoke” – i.e. start to burn – long before they get close to boiling.

We’re all familiar with the idea that fats don’t mix well with water, and herein lies the problem: all that fatty gloop that’s stuck to the inside of your oven just doesn’t want to come off with standard cleaning methods, particularly when it’s built up over time.

Can chemistry help us here? What are fats, chemically? Well, they’re esters. Which may or may not mean anything to you, depending on how much chemistry you can remember from school. But even if you don’t remember the name, trust me, you know the smell. In particular, nail polishes and nail polish removers contain the simple ester known as ethyl acetate, otherwise known as ethyl ethanoate. (Some people say this chemical smells like pear drops which… only really helps if you know what pear drops smell like. Look, it smells of nail polish, okay?)

Fats are esters (image source)

Anyway, the point is that esters have a particular sequence of atoms that has a carbon bonded to an oxygen, which is bonded to another carbon, which is in turn double-bonded to oxygen. This is a bit of a mouthful, so chemists often write it as COOC. In the diagram here, oxygen atoms are red while carbon atoms are black.

There are actually three ester groups in fat molecules – which explains why fats are also known as triglycerides.

In terms of general chemistry, esters form when a carboxylic acid (a molecule which contains a COOH group) reacts with an alcohol (a molecule that contains an OH group). And this is where it all starts to come together – honest – because you’ve probably heard of fatty acids, right? If nothing else, the words turn up in certain food additive names, in particular E471 mono- and diglycerides of fatty acids, which is really common in lots of foods, from ice cream to bread rolls.

Glycerol is a polyol — a molecule that contains several alcohol groups (image source)

Well, this reaction is reversible, and as a result fats (which are esters, remember) break up into fatty acids and glycerol – which is a polyol, that is, a molecule with several alcohol groups. Or, to look at it the other way around: fats are made by combining fatty acids with glycerol.

And the reason it’s useful to understand all this is that the way you break up esters, and therefore fat, is with alkalis. (Well, you can do it with acid, too, but let’s not worry about that for now.)

Strong alkalis break up fats in a chemical reaction called hydrolysis — the word comes from the Greek for water (hydro) and unbind (lysis) and so literally means “split up with water”. Humans have known about this particular bit of chemistry for a long time, because it’s fundamental to making soap. As I said a few months ago when I was banging on about hand-washing, the ancient Babylonians were making soap some 4800 years ago, by boiling fats with ashes – which works because alkaline compounds of calcium and potassium form when wood is burnt at high temperatures.

The grime in ovens is mostly fat.

The really clever thing about all this is that two things are happening when we mix alkali with fat: not only are we breaking up the fat molecules, but also the substances they break up into are water-soluble (whereas fats, as I said at the start, aren’t). Which makes them much easier to clean away with water. Obviously this is the very point of soap, but it’s also handy when trying to get all that baked-on gunk off your oven walls.

Now, in theory, this means you could get some lye (aka sodium hydroxide, probably), smear it all over your oven and voilà. But I don’t recommend it, for a few reasons. Firstly, it’s going to be difficult to apply, since sodium hydroxide is mostly sold as pellets or flakes (it’s pretty easy to buy, because people use it to make soap).

Sodium hydroxide, sometimes called lye, is often sold in the form of pellets.

But, you say, couldn’t I just dissolve it in water and spray or spread it on? Yes, yes you could. But it gets really, really hot when you mix it with water. So you need to be incredibly careful. Because, and this is my next point, chemically your skin is basically fat and protein, and this reaction we’re trying to do on oven sludge works equally well on your skin. Only, you know, more painfully, and with scarring and stuff. In short, if you’re handing lye, wear good nitrile on vinyl gloves and eye protection.

Actually, regardless of how you’re cleaning your oven you should wear gloves and eye protection, because the chemicals are still designed to break down fats and so… all of the above applies. It’s just that specially-designed oven cleaners tend to come with easier (and safer) ways to apply them. For example, they might come as a gel which you can paint on, and/or with bags that you can put the racks into, and may also be sold with gloves and arm protectors (but rarely goggles – get some separately). They might also have an extra surfactant, such as sodium laureth sulfate, added to help with breaking down grease. The main ingredient is still either potassium hydroxide or sodium hydroxide, though.

Well, possibly, but also not really, if you’re sensible.

As an aside, it makes me smile when I come across an article like this which talks about the “serious” chemicals in oven cleaners and more “natural” ways to clean your oven. The “natural” ways are invariably weak acids or alkalis such as lemon juice or baking soda, respectively. They’re essentially ineffective ways of trying to do exactly the same chemistry.

And okay, sure, the gel and the bag and so on in the modern kits are newer tech, but the strong alkali? Nothing more natural than that. As I said at the start, humans have literally been using it for thousands of years.

A point which really cannot be repeated enough: natural does not mean safe.

Fumes can be irritating to skin, eyes and lungs.

Speaking of which, you will get fumes during oven cleaning. Depending on the exact cleaning mixture involved, these will probably be an alkaline vapour, basically (haha) forming as everything gets hot. Such vapour is potentially irritating to skin, eyes and lungs, but not actually deadly toxic. Not that I recommend you stick your head in your freshly-scrubbed oven and inhale deeply, but you take my point. It might give food a soapy, possibly bitter (contrary to what’s stated in some text books, not all alkalis taste bitter, but do not experiment with this) taste if you really over-do it.

In short, if you’re cleaning your oven yourself: follow the manufacturer’s instructions, make sure your kitchen is well-ventilated, leave the oven door open for a while after you’ve finished and, to be really sure, give all the surfaces an extra wash down with plenty of water.

Put the cleaning off until January – after all, the oven’s only going to get dirty again.

And that’s… it, really. Whether you’re cleaning your own oven or getting someone else to do it for you, the chemistry involved is really, really old. And yes, the chemicals involved are hazardous, but not because they’re not “natural”. Quite the opposite.

Or you could just leave it. I mean, it’s only going to get dirty again when you cook Christmas dinner, right?


If you’re studying chemistry, have you got your Pocket Chemist yet? Why not grab one? It’s a hugely useful tool, and by buying one you’ll be supporting this site – it’s win-win! If you happen to know a chemist, it would make a brilliant stocking-filler! As would a set of chemistry word magnets!

Like the Chronicle Flask’s Facebook page for regular updates, or follow @chronicleflask on Twitter. Content is © Kat Day 2020. You may share or link to anything here, but you must reference this site if you do. If you enjoy reading my blog, and especially if you’re using information you’ve found here to write a piece for which you will be paid, please consider buying me a coffee through Ko-fi using the button below.
Buy Me a Coffee at ko-fi.com

Want something non-sciency to distract you from, well, everything? Why not check out my fiction blog: the fiction phial.

In the fridge or on the windowsill: where’s the best place to keep tomatoes?

Fresh fruit and vegetables are great, but where’s the best place to store them?

I’ve mentioned before that my Dad is a professional plant-wrangler (if you’ve never read the electric daisies post, do go and have a look – it’s a little-read favourite) and he often brings me home-grown fruit and vegetables.

What follows is an inevitable disagreement about storage, specifically, my habit of putting everything in the fridge.

In my defence, modern houses rarely have pantries (boo) and we don’t even have a garage. We do have a shed, but it’s at the bottom of our poorly-lit, somewhat muddy garden. Do I want to traipse out there on a cold, dark, autumn evening? No, I do not. So the fabled “cool, dark place” is a bit of problem. My fridge is cool and dark, I have argued, but here’s the thing – turns out, it’s too cool. And quite probably too dark.

This I have learned from the botanist James Wong (@botanygeek on Twitter), whose talk I attended on Monday this week at the Mathematical Institute in Oxford. James, it turns out, had a rather similar argument with his Mum, particularly regarding tomatoes.

We should’ve listened to out parents, because they were right. A lot of fruit and vegetables really are better stored outside of the fridge, and for tomatoes in particular “better” actually means “more nutritious”.

Lycopene is a very long molecule with lots of double C=C bonds.

Tomatoes, James explained, contain a lot of a chemical called lycopene. It’s a carotene pigment, and it’s what gives tomatoes their red colour.

Lycopene has lots of double bonds between its carbon atoms which form something chemists call a conjugated system. This has some rather cool properties, one of which is an ability to absorb certain wavelengths of light. Lycopene is especially good at absorbing blue and green wavelengths, leaving our eyes to detect the red light that’s left.

Lycopene absorbs blue and green light, which is why tomatoes appear red.

Tomatoes and lycopene also seem to have a lot of health benefits. There’s some evidence that lycopene might reduce the risk of prostate and other cancers. It also appears to reduce the risk of stroke, and eating tomato concentrate might even help to protect your skin from sun damage (don’t get any ideas, you still need sunblock). Admittedly the evidence is currently a bit shaky – it’s a case of “more research is needed” – but even if it turns out to that the causative relationship isn’t terribly strong, tomatoes are still a really good source of fibre and vitamins A, C and E. Plus, you know, they taste yummy!

But back to the fridge. Surely they will keep longer in the fridge, and the low temperatures will help to preserve the nutrients? Isn’t that how it works?

Well, no. As James explained, once tomatoes are severed from the plant they have exactly one purpose: to get eaten. The reason, from the plant’s point of view, is that the critter which eats them will hopefully wander off and – ahem – eliminate the tomato seeds at a later time, somewhere away from the parent plant. This spreads the seeds far and wide, allowing little baby tomato plants to grow in a nice, open space with lots of water and sun.

For this reason once the tomato fruit falls, or is cut, from the tomato plant it doesn’t just sit there doing nothing. No, it carries on producing lycopene. Or rather, it does if the temperature is above about 10 oC. Below that temperature (as in a fridge), everything more or less stops. But, leave a tomato at room temperature and lycopene levels increase significantly. Plus, the tomato pumps out extra volatile compounds – both as an insect repellant and to attract animals which might usefully eat it – which means… yes: room temperature tomatoes really do smell better. As if that weren’t enough, chilling tomatoes can damage cell membranes, which can actually cause them to spoil more quickly.

In summary, not only will tomatoes last longer out of the fridge, they will actually contain more healthy lycopene!

Anecdotally, once I got over my scepticism and actually started leaving my tomatoes on my windowsill (after years of refrigeration) I discovered that it’s true. My windowsill tomatoes really do seem to last longer than they used to in the fridge, and they almost never go mouldy. Of course, it’s possible that I might not be comparing like for like (who knows what variety of tomato I bought last year compared to this week), but I urge you to try it for yourself.

James mentioned lots of other interesting bits and pieces in his talk. Did you know that sun-dried shiitake mushrooms are much higher in vitamin D? Or that you can double the amount of flavonoid you absorb from your blueberries by cooking them? (Take that, raw food people!) Storing apples on your windowsill is likely to increase the amount of healthy polyphenols in their skin, red peppers are better for you than green ones, adding mustard to cooked broccoli makes it more nutritious, and it would be much better if we bought our butternut squash in the autumn and saved it for Christmas – it becomes sweeter and more flavoursome over time.

In short, fascinating. Who wants to listen to some “clean eater” making it up as they go along when you can listen to a fully-qualified botanist who really knows what he’s talking about? Do check out the book, How to Eat Better, by James Wong – it’s packed full of brilliant tidbits like this and has loads of recipes.

And yes, Dad: you were right.


Like the Chronicle Flask’s Facebook page for regular updates, or follow @chronicleflask on Twitter. All content is © Kat Day 2017. You may share or link to anything here, but you must reference this site if you do.


All comments are moderated. Abusive comments will be deleted, as will any comments referring to posts on this site which have had comments disabled.

The 2015 Chronicle Flask Christmas Quiz!

Christmas preparations are well underway by now, but have you been paying attention to your chemistry? Of course you have! Well, let’s see… (answers at the bottom, this is a low-tech quiz).

  1. Let’s start with an easy one. In the nativity, the three wise men allegedly turned up at the stable with three pressies for little Jesus. But which chemical symbol could represent one of the gifts?
    a) Ag
    b) Au
    c) Al
    wisemen
  2. On the topic of chemical symbols, which christmassy word can you make out of these elements?
    carbon, radium, carbon (again), potassium, erbium, sulfur

    PT

  3. It doesn’t look like snow is very likely in most of England this year, but we can dream. And while we’re dreaming: why do snowflakes always have six sides?
    a) because water has three atoms and they join up to make six.
    b) it’s usually something do with hydrogen bonding.
    c) they don’t, it’s a myth.

    snowflakes_PNG7535

  4. Where would you be most likely to find this molecule at Christmas?
    a) In the Christmas cookies.
    b) In the festive stilton.
    c) In the Christmas turkey.
    cinnamaldehyde
  5. Mmm Christmas cookies! But which other chemical substance is often added to cakes and biscuits to help them rise?
    a) sodium carbonate.
    b) sodium hydrogen carbonate.
    b) calcium carbonate.

    christmas-cookies-wallpapers-hd-desktop-wallpaper-christmas-cookie-desktopchristmas-cookies-clip-easy-sugar-tree-cute-ideas-very-best-candy-recipes-with-pictures-martha-stewart-wallpapers-hd-desktop

  6. Let’s think about the booze for a moment. Which fact is true about red wine?
    a) It tastes significantly different to white wine.
    b) Mixing it with other drinks will make your hangover worse.
    c) It’s mostly water.
    red-wine
  7. And why are beer bottles usually brown or green?
    a) Because these colours block blue light.
    b) Because in the old days beer was often a funny colour, and the coloured glass disguised it.
    c) Because it’s good luck.
    beer-bottles
  8. Where would you be most likely to find this molecule at Christmas?
    a) In the Christmas cake
    b) In the mulled wine
    c) In the wrapping paper

    Cellulose

  9. Let’s turn to New Year for a moment. What makes party poppers go pop?
    a) Gunpowder
    b) Silver fulminate
    c) Armstrong’s mixture

    Party_poppers

  10. And who doesn’t love a firework or two? So, which substance is used to produce a blue colour?
    a) Sodium bicarbonate
    b) Copper chloride
    c) Magnesium powder

    blue fireworks

ANSWERS

  1. b) Au – gold
  2. CRaCKErS!
  3. b) – hydrogen bonds form between the oxygen atom of one water molecule and the hydrogen atom of another molecule, causing the molecules to link up into hexagon shapes (pretty much any question to do with water can be answered with ‘something to do with hydrogen bonding’).
  4. a) – in the cookies, it’s cinnamaldehyde, which is the molecule that gives cinnamon it’s flavour and smell.
  5. b) – sodium hydrogen carbonate, also known as sodium bicarbonate, or just ‘bicarb’, breaks down when heated and forms carbon dioxide. It’s the formation of this gas which causes mixtures to rise.
  6. c) – the flavour and colour components of wine only make up about 2% of its volume. If we assume 12% alcohol, then the wine is 86% water. Still, probably best not to glug on a wine bottle after your morning run. On the other two points, there isn’t much evidence that mixing drinks makes hangovers worse (unless, as a result, you drink more alcohol), although some specific types of drinks may cause worse symptoms than others. As for taste, in this paper researchers describe an experiment where they gave 54 tasters white wine dyed red with food colouring. The tasters then went on to describe it as a red wine, suggesting that appearance was much more important than actual taste.
  7. a) – the coloured glass used in beer bottles is there to block blue light. These wavelengths can cause some of the substances in beer to react with each other, resulting in unpleasant flavours.
  8. c) – in the wrapping paper. It’s cellulose, the main constituent of paper.
  9. c) – It’s usually Armstrong’s mixture in party poppers, which is a highly sensitive primary explosive containing red phosphorous (eek). Did I trick any of the chemists out there? Silver fulminate is used in Christmas crackers.
  10. b) – Copper chloride, and also copper oxide and copper carbonate when combined with other things. Sodium bicarbonate produces yellow, and magnesium is white.

How many did you get right? Tell me in the comments, or pop along to The Chronicle Flask’s Facebook page and brag there. Merry Christmas!

Cooking chemistry: American biscuits

American biscuitsIt’s come up before of course, but there’s a lot of chemistry in cooking. I do like tinkering with recipes: all that lovely weighing things on digital scales, measuring liquids, working out ratios and tweaking the exact sequence of steps – what more could a chemist want? I spent ages working on my chocolate brownie recipe when I should have been writing up my PhD thesis (it does produce excellent chocolate brownies, so I maintain it was a entirely valid use of my time).

Last week fate transpired to drop more than one reference to ‘biscuits’ in my lap. Now, these were American sources, so I was aware that they weren’t talking about what we call biscuits (and Americans call cookies), not least because in one of them there was talk of making a ‘biscuit sandwich’ that included sausage. Now, I like a chocolate digestive as much as the next person, but I wouldn’t slap a chunk of grilled pork product in between two of them and call it breakfast.

So I decided to try and find a recipe. And, after a bit of faffing around converting Fahrenheit to Celsius and cups to grams (honestly, I do understand the principle of cups and baking by ratio, but is it really easier to measure out a cup of butter than just use scales?) I finally came up with a workable recipe.

Turns out American biscuits are basically sugar-less scones. Who knew.

What’s the chemistry connection? Well, just like scones, the raising agent in American biscuits is baking soda, or sodium hydrogen carbonate. It causes the mixture to rise because it does this when it’s heated:

2NaHCO3 –> CO2 + H2O + Na2CO3

This type of reaction is called thermal decomposition, because the heat is causing the sodium hydrogen carbonate (NaHCO3) to break apart. The carbon dioxide (CO2) is a gas and produces lots of lovely bubbles that make your finished product nice and light.  Water (H2O) is also a product, which helps to keep everything nice and moist.

This clever bit of cookery chemistry starts to happen slowly at 50 oC, but once you get over 200 oC (a more typical baking temperature) it’s pretty fast. So much so that you can bake your biscuits for just 12 minutes or so and they’ll be perfectly risen. Contrary to common belief, there’s no need to add some kind of acid to the mixture (buttermilk is often mentioned). Acids do react with carbonates to produce carbon dioxide, but there’s no need – heat will do the job for you.

Cheese and ham biscuit sandwichSo without further ado, here’s my tinkered recipe. It’s really great this, it literally only takes 10 minutes plus baking time, and you probably have all these ingredients already:

Ingredients

  • 360 g plain white flour
  • 4 tsp of baking soda (sodium hydrogen carbonate)
  • 1 tsp sugar
  • ½ tsp salt
  • 75 g cold (straight from the fridge) unsalted butter, cut into cubes
  • 230 g* milk

(*If you prefer to use a jug this is as close to 230 ml as makes no difference, since milk is mostly water and water has a density of 1 g/ml, but it saves washing up to just stick the bowl on the scales and weigh it.)

Method

  1. Heat the oven to 230 oC.  It needs to be nice and hot, so turn it on in good time.
  2. Measure the dry ingredients in a large bowl and mix them.
  3. Using clean, cold hands rub the butter into the dry ingredients until the mixture resembles fine breadcrumbs and there are no lumps of butter.
  4. Pour in the milk and mix with the flat of a knife until the dough comes together.
  5. Take the dough out of the bowl and place it on a lightly floured surface. Knead it gently a few times until it forms an even ball and has an elastic, ever so slightly sticky, texture.
  6. Press into a rough oblong, about 2 cm thick.  Cut the dough into six roughly equal pieces (you can use cookie cutters, but again, why create unnecessary washing up).  Place these on a greased baking tray.
  7. Bake for about 12 minutes, until the biscuits are golden brown (the colour is, of course, courtesy of another bit of chemistry: the Maillard reaction).
  8. Transfer them to a rack to cool, but no need to leave them too long – they’re best eaten warm!

Split the biscuits in half and fill them with anything you like, savoury or sweet. They’re delicious served plain with lashings of butter. As a more substantial lunchtime snack, try cheese and ham. Lemon curd has also proved a favourite. If you have leftovers they will keep until the next day if wrapped up, and are especially nice toasted and buttered.

And there you are, a metric version of the classic American biscuit recipe, with a bit of chemistry thrown in. I think this might be a first. Heston eat your heart out.